DOI: 10.18129/B9.bioc.cellmigRation  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see cellmigRation.

Track Cells, Analyze Cell Trajectories and Compute Migration Statistics

Bioconductor version: 3.16

Import TIFF images of fluorescently labeled cells, and track cell movements over time. Parallelization is supported for image processing and for fast computation of cell trajectories. In-depth analysis of cell trajectories is enabled by 15 trajectory analysis functions.

Author: Salim Ghannoum [aut, cph], Damiano Fantini [aut, cph], Waldir Leoncio [cre, aut], Øystein Sørensen [aut]

Maintainer: Waldir Leoncio <w.l.netto at medisin.uio.no>

Citation (from within R, enter citation("cellmigRation")):


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biocViews CellBiology, DataImport, DataRepresentation, Software
Version 1.6.0
In Bioconductor since BioC 3.13 (R-4.1) (2 years)
License GPL-2
Depends R (>= 4.1), methods, foreach
Imports tiff, graphics, stats, utils, reshape2, parallel, doParallel, grDevices, matrixStats, FME, SpatialTools, sp, vioplot, FactoMineR, Hmisc
Suggests knitr, rmarkdown, dplyr, ggplot2, RUnit, BiocGenerics, BiocManager, kableExtra, rgl
URL https://github.com/ocbe-uio/cellmigRation/
BugReports https://github.com/ocbe-uio/cellmigRation/issues
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Source Package cellmigRation_1.6.0.tar.gz
Windows Binary cellmigRation_1.6.0.zip
macOS Binary (x86_64) cellmigRation_1.6.0.tgz
macOS Binary (arm64) cellmigRation_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/cellmigRation
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cellmigRation
Bioc Package Browser https://code.bioconductor.org/browse/cellmigRation/
Package Short Url https://bioconductor.org/packages/cellmigRation/
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