DOI: 10.18129/B9.bioc.cbaf  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see cbaf.

Automated functions for comparing various omic data from

Bioconductor version: 3.16

This package contains functions that allow analysing and comparing omic data across various cancers/cancer subgroups easily. So far, it is compatible with RNA-seq, microRNA-seq, microarray and methylation datasets that are stored on

Author: Arman Shahrisa [aut, cre, cph], Maryam Tahmasebi Birgani [aut]

Maintainer: Arman Shahrisa <shahrisa.arman at>

Citation (from within R, enter citation("cbaf")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews AssayDomain, BiomedicalInformatics, ComparativeGenomics, DNAMethylation, Epigenetics, GeneExpression, Genetics, Microarray, ResearchField, Software, Transcription, Transcriptomics
Version 1.20.1
In Bioconductor since BioC 3.6 (R-3.4) (5.5 years)
License Artistic-2.0
Depends R (>= 4.1)
Imports BiocFileCache, RColorBrewer, cBioPortalData, genefilter, gplots, grDevices, stats, utils, openxlsx
Suggests knitr, rmarkdown, BiocStyle
Depends On Me
Imports Me
Suggests Me
Links To Me
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