DOI: 10.18129/B9.bioc.borealis  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see borealis.

Bisulfite-seq OutlieR mEthylation At singLe-sIte reSolution

Bioconductor version: 3.16

Borealis is an R library performing outlier analysis for count-based bisulfite sequencing data. It detectes outlier methylated CpG sites from bisulfite sequencing (BS-seq). The core of Borealis is modeling Beta-Binomial distributions. This can be useful for rare disease diagnoses.

Author: Garrett Jenkinson [aut, cre]

Maintainer: Garrett Jenkinson <gargar934 at>

Citation (from within R, enter citation("borealis")):


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biocViews Coverage, DNAMethylation, DifferentialMethylation, Sequencing, Software
Version 1.2.2
In Bioconductor since BioC 3.15 (R-4.2) (1 year)
License GPL-3
Depends R (>= 4.2.0), Biobase
Imports doParallel, snow, purrr, plyr, foreach, gamlss, gamlss.dist, bsseq, methods, DSS, R.utils, utils, stats, ggplot2, cowplot, dplyr, rlang, GenomicRanges
Suggests BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics, annotatr, tidyr, TxDb.Hsapiens.UCSC.hg19.knownGene,
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