DOI: 10.18129/B9.bioc.atSNP  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see atSNP.

Affinity test for identifying regulatory SNPs

Bioconductor version: 3.16

atSNP performs affinity tests of motif matches with the SNP or the reference genomes and SNP-led changes in motif matches.

Author: Chandler Zuo [aut], Sunyoung Shin [aut, cre], Sunduz Keles [aut]

Maintainer: Sunyoung Shin <sunyoung.shin at>

Citation (from within R, enter citation("atSNP")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews ChIPSeq, GenomeAnnotation, MotifAnnotation, Software, Visualization
Version 1.14.0
In Bioconductor since BioC 3.9 (R-3.6) (4 years)
License GPL-2
Depends R (>= 3.6)
Imports BSgenome, BiocFileCache, BiocParallel, Rcpp, data.table, ggplot2, grDevices, graphics, grid, motifStack, rappdirs, stats, testthat, utils, lifecycle
LinkingTo Rcpp
Suggests BiocStyle, knitr, rmarkdown
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