DOI: 10.18129/B9.bioc.apeglm  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see apeglm.

Approximate posterior estimation for GLM coefficients

Bioconductor version: 3.16

apeglm provides Bayesian shrinkage estimators for effect sizes for a variety of GLM models, using approximation of the posterior for individual coefficients.

Author: Anqi Zhu [aut, cre], Joshua Zitovsky [ctb], Joseph Ibrahim [aut], Michael Love [aut]

Maintainer: Anqi Zhu <anqizhu at live.unc.edu>

Citation (from within R, enter citation("apeglm")):


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biocViews Bayesian, DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software
Version 1.20.0
In Bioconductor since BioC 3.6 (R-3.4) (5.5 years)
License GPL-2
Imports emdbook, SummarizedExperiment, GenomicRanges, methods, stats, utils, Rcpp
LinkingTo Rcpp, RcppEigen, RcppNumerical
Suggests DESeq2, airway, knitr, rmarkdown, testthat
Depends On Me rnaseqGene
Imports Me airpart, debrowser, DiffBind, TEKRABber
Suggests Me bambu, BRGenomics, DESeq2, fishpond, NanoporeRNASeq
Links To Me
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Source Package apeglm_1.20.0.tar.gz
Windows Binary apeglm_1.20.0.zip (64-bit only)
macOS Binary (x86_64) apeglm_1.20.0.tgz
macOS Binary (arm64) apeglm_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/apeglm
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/apeglm
Bioc Package Browser https://code.bioconductor.org/browse/apeglm/
Package Short Url https://bioconductor.org/packages/apeglm/
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