DOI: 10.18129/B9.bioc.affyILM  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see affyILM.

Linear Model of background subtraction and the Langmuir isotherm

Bioconductor version: 3.16

affyILM is a preprocessing tool which estimates gene expression levels for Affymetrix Gene Chips. Input from physical chemistry is employed to first background subtract intensities before calculating concentrations on behalf of the Langmuir model.

Author: K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon

Maintainer: Myriam Kroll and Fabrice Berger <fabrice.berger at>

Citation (from within R, enter citation("affyILM")):


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PDF R Script affyILM1.3.0
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biocViews Microarray, OneChannel, Preprocessing, Software
Version 1.50.0
In Bioconductor since BioC 2.6 (R-2.11) (13 years)
License GPL-3
Depends R (>= 2.10.0), methods, gcrma
Imports affxparser(>= 1.16.0), affy, graphics, Biobase
Suggests AffymetrixDataTestFiles, hgfocusprobe
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