DOI: 10.18129/B9.bioc.XDE  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see XDE.

XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression

Bioconductor version: 3.16

Multi-level model for cross-study detection of differential gene expression.

Author: R.B. Scharpf, G. Parmigiani, A.B. Nobel, and H. Tjelmeland

Maintainer: Robert Scharpf <rscharpf at jhsph.edu>

Citation (from within R, enter citation("XDE")):


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if (!require("BiocManager", quietly = TRUE))


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PDF R Script XDE Vignette
PDF R Script XdeParameterClass Vignette
PDF   Reference Manual
Text   NEWS


biocViews DifferentialExpression, Microarray, Software
Version 2.44.0
In Bioconductor since BioC 2.2 (R-2.7) (15 years)
License LGPL-2
Depends R (>= 2.10.0), Biobase(>= 2.5.5)
Imports BiocGenerics, genefilter, graphics, grDevices, gtools, methods, stats, utils, mvtnorm, RColorBrewer, GeneMeta, siggenes
Suggests MASS, RUnit
Enhances coda
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

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Source Package XDE_2.44.0.tar.gz
Windows Binary XDE_2.44.0.zip
macOS Binary (x86_64) XDE_2.44.0.tgz
macOS Binary (arm64) XDE_2.44.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/XDE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/XDE
Bioc Package Browser https://code.bioconductor.org/browse/XDE/
Package Short Url https://bioconductor.org/packages/XDE/
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