DOI: 10.18129/B9.bioc.Voyager  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see Voyager.

From geospatial to spatial omics

Bioconductor version: 3.16

SpatialFeatureExperiment (SFE) is a new S4 class for working with spatial single-cell genomics data. The voyager package implements basic exploratory spatial data analysis (ESDA) methods for SFE. This first version supports univariate global spatial ESDA methods such as Moran's I, permutation testing for Moran's I, and correlograms. The Voyager package also implements plotting functions to plot SFE data and ESDA results. Multivariate ESDA and univariate local metrics will be added in later versions.

Author: Lambda Moses [aut, cre] , Kayla Jackson [aut] , Lior Pachter [aut, rev]

Maintainer: Lambda Moses <dlu2 at>

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biocViews GeneExpression, Software, Spatial, Transcriptomics, Visualization
Version 1.0.10
In Bioconductor since BioC 3.16 (R-4.2) (< 6 months)
License Artistic-2.0
Depends R (>= 4.2.0)
Imports BiocParallel, bluster, ggnewscale, ggplot2 (>= 3.4.0), Matrix, methods, patchwork, rlang, S4Vectors, scales, scico, sf, SingleCellExperiment, SpatialExperiment, SpatialFeatureExperiment, spdep, stats, SummarizedExperiment
Suggests BiocSingular, BiocStyle, cowplot, dbscan, ExperimentHub, hexbin, knitr, rmarkdown, scater, scattermore, scran, SFEData, sparseMatrixStats, testthat (>= 3.0.0), vdiffr
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