DOI: 10.18129/B9.bioc.TargetSearch  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see TargetSearch.

A package for the analysis of GC-MS metabolite profiling data

Bioconductor version: 3.16

This packages provides a flexible, fast and accurate method for targeted pre-processing of GC-MS data. The user provides a (often very large) set of GC chromatograms and a metabolite library of targets. The package will automatically search those targets in the chromatograms resulting in a data matrix that can be used for further data analysis.

Author: Alvaro Cuadros-Inostroza [aut, cre], Jan Lisec [aut], Henning Redestig [aut], Matt Hannah [aut]

Maintainer: Alvaro Cuadros-Inostroza <acuadros+bioc at>

Citation (from within R, enter citation("TargetSearch")):


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if (!require("BiocManager", quietly = TRUE))


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PDF R Script RI correction extra
PDF R Script The TargetSearch Package
PDF   Reference Manual
Text   NEWS


biocViews DecisionTree, ImmunoOncology, MassSpectrometry, Preprocessing, Software
Version 2.0.0
In Bioconductor since BioC 2.4 (R-2.9) (14 years)
License GPL (>= 2)
Imports graphics, grDevices, methods, ncdf4, stats, utils, assertthat
Suggests TargetSearchData, BiocStyle, knitr, tinytest
Depends On Me
Imports Me
Suggests Me
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