DOI: 10.18129/B9.bioc.TarSeqQC  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see TarSeqQC.

TARgeted SEQuencing Experiment Quality Control

Bioconductor version: 3.16

The package allows the representation of targeted experiment in R. This is based on current packages and incorporates functions to do a quality control over this kind of experiments and a fast exploration of the sequenced regions. An xlsx file is generated as output.

Author: Gabriela A. Merino, Cristobal Fresno, Yanina Murua, Andrea S. Llera and Elmer A. Fernandez

Maintainer: Gabriela Merino <merino.gabriela33 at gmail.com>

Citation (from within R, enter citation("TarSeqQC")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script TarSeqQC: Targeted Sequencing Experiment Quality Control
PDF   Reference Manual
Text   NEWS


biocViews Alignment, Coverage, DataImport, QualityControl, Sequencing, Software, TargetedResequencing, Visualization
Version 1.28.0
In Bioconductor since BioC 3.2 (R-3.2) (7.5 years)
License GPL (>=2)
Depends R (>= 3.5.1), methods, GenomicRanges, Rsamtools(>= 1.9.2), ggplot2, plyr, openxlsx
Imports grDevices, stats, utils, S4Vectors, IRanges, BiocGenerics, reshape2, GenomeInfoDb, BiocParallel, Biostrings, cowplot, graphics, GenomicAlignments, Hmisc
Suggests BiocManager, RUnit
URL http://www.bdmg.com.ar
Depends On Me
Imports Me
Suggests Me
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TarSeqQC_1.28.0.tar.gz
Windows Binary TarSeqQC_1.27.0.zip (64-bit only)
macOS Binary (x86_64) TarSeqQC_1.27.0.tgz
macOS Binary (arm64) TarSeqQC_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TarSeqQC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TarSeqQC
Bioc Package Browser https://code.bioconductor.org/browse/TarSeqQC/
Package Short Url https://bioconductor.org/packages/TarSeqQC/
Package Downloads Report Download Stats

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