DOI: 10.18129/B9.bioc.TTMap  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see TTMap.

Two-Tier Mapper: a clustering tool based on topological data analysis

Bioconductor version: 3.16

TTMap is a clustering method that groups together samples with the same deviation in comparison to a control group. It is specially useful when the data is small. It is parameter free.

Author: Rachel Jeitziner

Maintainer: Rachel Jeitziner <rachel.jeitziner at>

Citation (from within R, enter citation("TTMap")):


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PDF R Script Manual for the TTMap library
PDF   Reference Manual


biocViews Classification, Clustering, DifferentialExpression, Microarray, MultipleComparison, Software
Version 1.20.0
In Bioconductor since BioC 3.7 (R-3.5) (5 years)
License GPL-2
Depends rgl, colorRamps
Imports grDevices, graphics, stats, utils, methods, SummarizedExperiment, Biobase
Suggests BiocStyle, airway
Depends On Me
Imports Me
Suggests Me
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