DOI: 10.18129/B9.bioc.TIN  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see TIN.

Transcriptome instability analysis

Bioconductor version: 3.16

The TIN package implements a set of tools for transcriptome instability analysis based on exon expression profiles. Deviating exon usage is studied in the context of splicing factors to analyse to what degree transcriptome instability is correlated to splicing factor expression. In the transcriptome instability correlation analysis, the data is compared to both random permutations of alternative splicing scores and expression of random gene sets.

Author: Bjarne Johannessen, Anita Sveen and Rolf I. Skotheim

Maintainer: Bjarne Johannessen <bjajoh at rr-research.no>

Citation (from within R, enter citation("TIN")):


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PDF R Script Introduction to the TIN package
PDF   Reference Manual
Text   NEWS


biocViews AlternativeSplicing, DifferentialSplicing, ExonArray, GeneExpression, Genetics, Microarray, Software
Version 1.30.0
In Bioconductor since BioC 3.1 (R-3.2) (8 years)
License Artistic-2.0
Depends R (>= 2.12.0), data.table, impute, aroma.affymetrix
Imports WGCNA, squash, stringr
Suggests knitr, aroma.light, affxparser, RUnit, BiocGenerics
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package TIN_1.30.0.tar.gz
Windows Binary TIN_1.30.0.zip
macOS Binary (x86_64) TIN_1.30.0.tgz
macOS Binary (arm64) TIN_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TIN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TIN
Bioc Package Browser https://code.bioconductor.org/browse/TIN/
Package Short Url https://bioconductor.org/packages/TIN/
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