DOI: 10.18129/B9.bioc.TFutils  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see TFutils.


Bioconductor version: 3.16

This package helps users to work with TF metadata from various sources. Significant catalogs of TFs and classifications thereof are made available. Tools for working with motif scans are also provided.

Author: Vincent Carey [aut, cre], Shweta Gopaulakrishnan [aut]

Maintainer: Vincent Carey <stvjc at>

Citation (from within R, enter citation("TFutils")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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HTML R Script A note on fimo16
HTML R Script TFutils -- representing TFBS and TF target sets
PDF   Reference Manual
Text   NEWS


biocViews Software, Transcriptomics
Version 1.18.0
In Bioconductor since BioC 3.7 (R-3.5) (5 years)
License Artistic-2.0
Depends R (>= 4.1.0)
Imports methods, dplyr, magrittr, miniUI, shiny, Rsamtools, GSEABase, rjson, BiocFileCache, DT, httr, readxl, AnnotationDbi,, utils
Suggests knitr, data.table, testthat, AnnotationFilter, Biobase, GenomicFeatures, GenomicRanges, Gviz, IRanges, S4Vectors, EnsDb.Hsapiens.v75, BiocParallel, BiocStyle, GO.db, GenomicFiles, GenomeInfoDb, SummarizedExperiment, UpSetR, ggplot2, png, gwascat, MotifDb, motifStack, RColorBrewer, rmarkdown
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