DOI: 10.18129/B9.bioc.TFEA.ChIP  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see TFEA.ChIP.

Analyze Transcription Factor Enrichment

Bioconductor version: 3.16

Package to analize transcription factor enrichment in a gene set using data from ChIP-Seq experiments.

Author: Laura Puente SantamarĂ­a, Luis del Peso

Maintainer: Laura Puente SantamarĂ­a <lpsantamaria at>

Citation (from within R, enter citation("TFEA.ChIP")):


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biocViews ChIPSeq, GeneRegulation, GeneSetEnrichment, ImmunoOncology, RNASeq, Sequencing, Software, Transcription, Transcriptomics
Version 1.18.0
In Bioconductor since BioC 3.7 (R-3.5) (5 years)
License Artistic-2.0
Depends R (>= 3.5)
Imports GenomicRanges, IRanges, biomaRt, GenomicFeatures, grDevices, dplyr, stats, utils, R.utils, methods,
Suggests knitr, rmarkdown, S4Vectors, plotly, scales, tidyr, ggplot2, DESeq2, BiocGenerics, ggrepel, rcompanion, TxDb.Hsapiens.UCSC.hg19.knownGene
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