DOI: 10.18129/B9.bioc.TENxIO  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see TENxIO.

Import methods for 10X Genomics files

Bioconductor version: 3.16

Provides a structured S4 approach to importing data files from the 10X pipelines. It mainly supports Single Cell Multiome ATAC + Gene Expression data among other data types. The main Bioconductor data representations used are SingleCellExperiment and RaggedExperiment.

Author: Marcel Ramos [aut, cre]

Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>

Citation (from within R, enter citation("TENxIO")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews DataImport, Infrastructure, SingleCell, Software
Version 1.0.1
In Bioconductor since BioC 3.16 (R-4.2) (< 6 months)
License Artistic-2.0
Depends R (>= 4.2.0), SingleCellExperiment, SummarizedExperiment
Imports BiocBaseUtils, BiocGenerics, BiocIO, GenomeInfoDb, GenomicRanges, Matrix, MatrixGenerics, methods, RCurl, readr, R.utils, S4Vectors, utils
Suggests BiocStyle, DropletTestFiles, ExperimentHub, HDF5Array, knitr, RaggedExperiment, rhdf5, rmarkdown, Rsamtools, tinytest
URL https://github.com/waldronlab/TENxIO
BugReports https://github.com/waldronlab/TENxIO/issues
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Follow Installation instructions to use this package in your R session.

Source Package TENxIO_1.0.1.tar.gz
Windows Binary TENxIO_1.0.1.zip (64-bit only)
macOS Binary (x86_64)
macOS Binary (arm64) TENxIO_1.0.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/TENxIO
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TENxIO
Bioc Package Browser https://code.bioconductor.org/browse/TENxIO/
Package Short Url https://bioconductor.org/packages/TENxIO/
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