DOI: 10.18129/B9.bioc.TCseq  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see TCseq.

Time course sequencing data analysis

Bioconductor version: 3.16

Quantitative and differential analysis of epigenomic and transcriptomic time course sequencing data, clustering analysis and visualization of temporal patterns of time course data.

Author: Mengjun Wu <minervajunjun at>, Lei Gu <leigu at>

Maintainer: Mengjun Wu <minervajunjun at>

Citation (from within R, enter citation("TCseq")):


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PDF R Script TCseq Vignette
PDF   Reference Manual


biocViews ChIPSeq, Clustering, DifferentialExpression, Epigenetics, RNASeq, Sequencing, Software, TimeCourse, Visualization
Version 1.22.6
In Bioconductor since BioC 3.5 (R-3.4) (6 years)
License GPL (>= 2)
Depends R (>= 3.4)
Imports edgeR, BiocGenerics, reshape2, GenomicRanges, IRanges, SummarizedExperiment, GenomicAlignments, Rsamtools, e1071, cluster, ggplot2, grid, grDevices, stats, utils, methods, locfit
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