DOI: 10.18129/B9.bioc.SEPIRA  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see SEPIRA.

Systems EPigenomics Inference of Regulatory Activity

Bioconductor version: 3.16

SEPIRA (Systems EPigenomics Inference of Regulatory Activity) is an algorithm that infers sample-specific transcription factor activity from the genome-wide expression or DNA methylation profile of the sample.

Author: Yuting Chen [aut, cre], Andrew Teschendorff [aut]

Maintainer: Yuting Chen <cytwarmmay at>

Citation (from within R, enter citation("SEPIRA")):


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biocViews GeneExpression, GeneRegulation, GeneTarget, Network, NetworkInference, Software, Transcription
Version 1.18.0
In Bioconductor since BioC 3.7 (R-3.5) (5 years)
License GPL-3
Depends R (>= 3.5.0)
Imports limma(>= 3.32.5), corpcor (>= 1.6.9), parallel (>= 3.3.1), stats
Suggests knitr, rmarkdown, testthat, igraph
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