DOI: 10.18129/B9.bioc.Rqc  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see Rqc.

Quality Control Tool for High-Throughput Sequencing Data

Bioconductor version: 3.16

Rqc is an optimised tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.

Author: Welliton Souza, Benilton Carvalho <beniltoncarvalho at gmail.com>

Maintainer: Welliton Souza <well309 at gmail.com>

Citation (from within R, enter citation("Rqc")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Using Rqc
PDF   Reference Manual
Text   NEWS


biocViews DataImport, QualityControl, Sequencing, Software
Version 1.32.0
In Bioconductor since BioC 3.0 (R-3.1) (8.5 years)
License GPL (>= 2)
Depends BiocParallel, ShortRead, ggplot2
Imports BiocGenerics(>= 0.25.1), Biostrings, IRanges, methods, S4Vectors, knitr (>= 1.7), BiocStyle, plyr, markdown, grid, reshape2, Rcpp (>= 0.11.6), biovizBase, shiny, Rsamtools, GenomicAlignments, GenomicFiles
LinkingTo Rcpp
Suggests rmarkdown, testthat
URL https://github.com/labbcb/Rqc
BugReports https://github.com/labbcb/Rqc/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rqc_1.32.0.tar.gz
Windows Binary Rqc_1.32.0.zip
macOS Binary (x86_64) Rqc_1.32.0.tgz
macOS Binary (arm64) Rqc_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rqc
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rqc
Bioc Package Browser https://code.bioconductor.org/browse/Rqc/
Package Short Url https://bioconductor.org/packages/Rqc/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: