DOI: 10.18129/B9.bioc.RiboCrypt  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see RiboCrypt.

Interactive visualization in genomics

Bioconductor version: 3.16

R Package for interactive visualization and browsing NGS data. It contains a browser for both transcript and genomic coordinate view. In addition a QC and general metaplots are included, among others differential translation plots and gene expression plots. The package is still under development.

Author: Michal Swirski [aut, cre], Haakon Tjeldnes [ctb]

Maintainer: Michal Swirski <michal.swirski at uw.edu.pl>

Citation (from within R, enter citation("RiboCrypt")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script RiboCrypt_overview.html
PDF   Reference Manual


biocViews RNASeq, RiboSeq, Sequencing, Software
Version 1.4.0
In Bioconductor since BioC 3.14 (R-4.1) (1.5 years)
License MIT + file LICENSE
Depends R (>= 3.6.0), ORFik(>= 1.13.12)
Imports BiocGenerics, BiocParallel, Biostrings, data.table, dplyr, GenomeInfoDb, GenomicFeatures, GenomicRanges, ggplot2, IRanges, plotly, rlang
Suggests testthat, rmarkdown, knitr, BiocStyle, BSgenome, BSgenome.Hsapiens.UCSC.hg19
URL https://github.com/m-swirski/RiboCrypt
BugReports https://github.com/m-swirski/RiboCrypt/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RiboCrypt_1.4.0.tar.gz
Windows Binary RiboCrypt_1.4.0.zip (64-bit only)
macOS Binary (x86_64) RiboCrypt_1.4.0.tgz
macOS Binary (arm64) RiboCrypt_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RiboCrypt
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RiboCrypt
Bioc Package Browser https://code.bioconductor.org/browse/RiboCrypt/
Package Short Url https://bioconductor.org/packages/RiboCrypt/
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