DOI: 10.18129/B9.bioc.RcwlPipelines  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see RcwlPipelines.

Bioinformatics pipelines based on Rcwl

Bioconductor version: 3.16

A collection of Bioinformatics tools and pipelines based on R and the Common Workflow Language.

Author: Qiang Hu [aut, cre], Qian Liu [aut], Shuang Gao [aut]

Maintainer: Qiang Hu <qiang.hu at roswellpark.org>

Citation (from within R, enter citation("RcwlPipelines")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



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biocViews Alignment, DNASeq, DataImport, ImmunoOncology, Preprocessing, QualityControl, RNASeq, Software, WorkflowStep
Version 1.14.0
In Bioconductor since BioC 3.9 (R-3.6) (4 years)
License GPL-2
Depends R (>= 3.6), Rcwl, BiocFileCache
Imports rappdirs, methods, utils, git2r, httr, S4Vectors
Suggests testthat, knitr, rmarkdown, BiocStyle
SystemRequirements nodejs
Depends On Me
Imports Me
Suggests Me
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package RcwlPipelines_1.14.0.tar.gz
Windows Binary
macOS Binary (x86_64) RcwlPipelines_1.14.0.tgz
macOS Binary (arm64) RcwlPipelines_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RcwlPipelines
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RcwlPipelines
Bioc Package Browser https://code.bioconductor.org/browse/RcwlPipelines/
Package Short Url https://bioconductor.org/packages/RcwlPipelines/
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