DOI: 10.18129/B9.bioc.RNAmodR.RiboMethSeq  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see RNAmodR.RiboMethSeq.

Detection of 2'-O methylations by RiboMethSeq

Bioconductor version: 3.16

RNAmodR.RiboMethSeq implements the detection of 2'-O methylations on RNA from experimental data generated with the RiboMethSeq protocol. The package builds on the core functionality of the RNAmodR package to detect specific patterns of the modifications in high throughput sequencing data.

Author: Felix G.M. Ernst [aut, cre] , Denis L.J. Lafontaine [ctb, fnd]

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("RNAmodR.RiboMethSeq")):


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biocViews Sequencing, Software, Visualization, WorkflowStep
Version 1.12.0
In Bioconductor since BioC 3.10 (R-3.6) (3.5 years)
License Artistic-2.0
Depends R (>= 4.0), RNAmodR(>= 1.5.3)
Imports methods, S4Vectors, BiocGenerics, IRanges, GenomicRanges, Gviz
Suggests BiocStyle, knitr, rmarkdown, testthat, rtracklayer, RNAmodR.Data
URL https://github.com/FelixErnst/RNAmodR.RiboMethSeq
BugReports https://github.com/FelixErnst/RNAmodR.RiboMethSeq/issues
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Source Package RNAmodR.RiboMethSeq_1.12.0.tar.gz
Windows Binary RNAmodR.RiboMethSeq_1.12.0.zip
macOS Binary (x86_64) RNAmodR.RiboMethSeq_1.12.0.tgz
macOS Binary (arm64) RNAmodR.RiboMethSeq_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RNAmodR.RiboMethSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RNAmodR.RiboMethSeq
Bioc Package Browser https://code.bioconductor.org/browse/RNAmodR.RiboMethSeq/
Package Short Url https://bioconductor.org/packages/RNAmodR.RiboMethSeq/
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