DOI: 10.18129/B9.bioc.RITAN  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see RITAN.

Rapid Integration of Term Annotation and Network resources

Bioconductor version: 3.16

Tools for comprehensive gene set enrichment and extraction of multi-resource high confidence subnetworks. RITAN facilitates bioinformatic tasks for enabling network biology research.

Author: Michael Zimmermann [aut, cre]

Maintainer: Michael Zimmermann <mtzimmermann at mcw.edu>

Citation (from within R, enter citation("RITAN")):


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if (!require("BiocManager", quietly = TRUE))


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HTML R Script Choosing Resources
HTML R Script Enrichment Vignette
HTML R Script Multi-Tissue Analysis
HTML R Script Network Biology Vignette
HTML R Script Relationships Among Resources
PDF   Reference Manual
Text   NEWS


biocViews FunctionalGenomics, GeneSetEnrichment, GraphAndNetwork, Network, NetworkEnrichment, NetworkInference, QualityControl, Software
Version 1.22.0
In Bioconductor since BioC 3.5 (R-3.4) (6 years)
License file LICENSE
Depends R (>= 4.0)
Imports graphics, methods, stats, utils, grid, gridExtra, reshape2, gplots, ggplot2, plotrix, RColorBrewer, STRINGdb, MCL, linkcomm, dynamicTreeCut, gsubfn, hash, png, sqldf, igraph, BgeeDB, knitr, RITANdata, GenomicFeatures, ensembldb, AnnotationFilter, EnsDb.Hsapiens.v86
Suggests rmarkdown, BgeeDB
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RITAN_1.22.0.tar.gz
Windows Binary RITAN_1.22.0.zip
macOS Binary (x86_64) RITAN_1.22.0.tgz
macOS Binary (arm64) RITAN_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RITAN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RITAN
Bioc Package Browser https://code.bioconductor.org/browse/RITAN/
Package Short Url https://bioconductor.org/packages/RITAN/
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