DOI: 10.18129/B9.bioc.Path2PPI  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see Path2PPI.

Prediction of pathway-related protein-protein interaction networks

Bioconductor version: 3.16

Package to predict protein-protein interaction (PPI) networks in target organisms for which only a view information about PPIs is available. Path2PPI predicts PPI networks based on sets of proteins which can belong to a certain pathway from well-established model organisms. It helps to combine and transfer information of a certain pathway or biological process from several reference organisms to one target organism. Path2PPI only depends on the sequence similarity of the involved proteins.

Author: Oliver Philipp [aut, cre], Ina Koch [ctb]

Maintainer: Oliver Philipp <contact at>

Citation (from within R, enter citation("Path2PPI")):


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biocViews Network, NetworkInference, Pathways, Proteomics, Software, SystemsBiology
Version 1.28.0
In Bioconductor since BioC 3.2 (R-3.2) (7.5 years)
License GPL (>= 2)
Depends R (>= 3.2.1), igraph (>= 1.0.1), methods
Suggests knitr, rmarkdown, RUnit, BiocGenerics, BiocStyle
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