DOI: 10.18129/B9.bioc.PCAN  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see PCAN.

Phenotype Consensus ANalysis (PCAN)

Bioconductor version: 3.16

Phenotypes comparison based on a pathway consensus approach. Assess the relationship between candidate genes and a set of phenotypes based on additional genes related to the candidate (e.g. Pathways or network neighbors).

Author: Matthew Page and Patrice Godard

Maintainer: Matthew Page <matthew.page at ucb.com> and Patrice Godard <patrice.godard at gmail.com>

Citation (from within R, enter citation("PCAN")):


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if (!require("BiocManager", quietly = TRUE))


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HTML R Script Assessing gene relevance for a set of phenotypes
PDF   Reference Manual


biocViews Annotation, FunctionalPrediction, Genetics, Network, Pathways, Sequencing, Software, VariantAnnotation
Version 1.26.0
In Bioconductor since BioC 3.3 (R-3.3) (7 years)
License CC BY-NC-ND 4.0
Depends R (>= 3.3), BiocParallel
Imports grDevices, stats
Suggests BiocStyle, knitr, rmarkdown, reactome.db, STRINGdb
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PCAN_1.26.0.tar.gz
Windows Binary PCAN_1.26.0.zip (64-bit only)
macOS Binary (x86_64) PCAN_1.26.0.tgz
macOS Binary (arm64) PCAN_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PCAN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PCAN
Bioc Package Browser https://code.bioconductor.org/browse/PCAN/
Package Short Url https://bioconductor.org/packages/PCAN/
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