DOI: 10.18129/B9.bioc.LymphoSeq  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see LymphoSeq.

Analyze high-throughput sequencing of T and B cell receptors

Bioconductor version: 3.16

This R package analyzes high-throughput sequencing of T and B cell receptor complementarity determining region 3 (CDR3) sequences generated by Adaptive Biotechnologies' ImmunoSEQ assay. Its input comes from tab-separated value (.tsv) files exported from the ImmunoSEQ analyzer.

Author: David Coffey <dcoffey at>

Maintainer: David Coffey <dcoffey at>

Citation (from within R, enter citation("LymphoSeq")):


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biocViews Alignment, MultipleSequenceAlignment, Sequencing, Software, TargetedResequencing, Technology
Version 1.26.0
In Bioconductor since BioC 3.3 (R-3.3) (7 years)
License Artistic-2.0
Depends R (>= 3.3), LymphoSeqDB
Imports data.table, plyr, dplyr, reshape, VennDiagram, ggplot2, ineq, RColorBrewer, circlize, grid, utils, stats, ggtree, msa, Biostrings, phangorn, stringdist, UpSetR
Suggests knitr, pheatmap, wordcloud, rmarkdown
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Source Package LymphoSeq_1.26.0.tar.gz
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