DOI: 10.18129/B9.bioc.LoomExperiment  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see LoomExperiment.

LoomExperiment container

Bioconductor version: 3.16

The LoomExperiment package provide a means to easily convert the Bioconductor "Experiment" classes to loom files and vice versa.

Author: Martin Morgan, Daniel Van Twisk

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("LoomExperiment")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script An introduction to the LoomExperiment class
PDF   Reference Manual
Text   NEWS


biocViews DataImport, DataRepresentation, ImmunoOncology, Infrastructure, SingleCell, Software
Version 1.16.0
In Bioconductor since BioC 3.8 (R-3.5) (4.5 years)
License Artistic-2.0
Depends R (>= 3.5.0), S4Vectors, SingleCellExperiment, SummarizedExperiment, methods, rhdf5, BiocIO
Imports DelayedArray, GenomicRanges, HDF5Array, Matrix, stats, stringr, utils
Suggests testthat, BiocStyle, knitr, rmarkdown, reticulate
Depends On Me OSCA.intro
Imports Me
Suggests Me hca
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LoomExperiment_1.16.0.tar.gz
Windows Binary LoomExperiment_1.16.0.zip
macOS Binary (x86_64) LoomExperiment_1.16.0.tgz
macOS Binary (arm64) LoomExperiment_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/LoomExperiment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LoomExperiment
Bioc Package Browser https://code.bioconductor.org/browse/LoomExperiment/
Package Short Url https://bioconductor.org/packages/LoomExperiment/
Package Downloads Report Download Stats

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