DOI: 10.18129/B9.bioc.IntEREst  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see IntEREst.

Intron-Exon Retention Estimator

Bioconductor version: 3.16

This package performs Intron-Exon Retention analysis on RNA-seq data (.bam files).

Author: Ali Oghabian <Ali.Oghabian at Helsinki.Fi>, Dario Greco <dario.greco at>, Mikko Frilander <Mikko.Frilander at>

Maintainer: Ali Oghabian <Ali.Oghabian at Helsinki.Fi>, Mikko Frilander <Mikko.Frilander at>

Citation (from within R, enter citation("IntEREst")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



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biocViews Alignment, AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, ImmunoOncology, Normalization, RNASeq, Sequencing, Software
Version 1.22.2
In Bioconductor since BioC 3.5 (R-3.4) (6 years)
License GPL-2
Depends R (>= 3.5.0), GenomicRanges, Rsamtools, SummarizedExperiment, edgeR, S4Vectors
Imports seqLogo, Biostrings, GenomicFeatures(>= 1.39.4), IRanges, seqinr, graphics, grDevices, stats, utils, grid, methods, DBI, RMySQL, GenomicAlignments, BiocParallel, BiocGenerics, DEXSeq, DESeq2
Suggests clinfun, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19
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Source Package IntEREst_1.22.2.tar.gz
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