DOI: 10.18129/B9.bioc.Harshlight  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see Harshlight.

A "corrective make-up" program for microarray chips

Bioconductor version: 3.16

The package is used to detect extended, diffuse and compact blemishes on microarray chips. Harshlight automatically marks the areas in a collection of chips (affybatch objects) and a corrected AffyBatch object is returned, in which the defected areas are substituted with NAs or the median of the values of the same probe in the other chips in the collection. The new version handle the substitute value as whole matrix to solve the memory problem.

Author: Mayte Suarez-Farinas, Maurizio Pellegrino, Knut M. Wittkowski, Marcelo O. Magnasco

Maintainer: Maurizio Pellegrino <mpellegri at berkeley.edu>

Citation (from within R, enter citation("Harshlight")):


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biocViews Microarray, OneChannel, Preprocessing, QualityControl, ReportWriting, Software
Version 1.70.0
In Bioconductor since BioC 1.9 (R-2.4) (16.5 years)
License GPL (>= 2)
Depends R (>= 2.10)
Imports affy, altcdfenvs, Biobase, stats, utils
URL http://asterion.rockefeller.edu/Harshlight/
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Source Package Harshlight_1.70.0.tar.gz
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