DOI: 10.18129/B9.bioc.HGC  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see HGC.

A fast hierarchical graph-based clustering method

Bioconductor version: 3.16

HGC (short for Hierarchical Graph-based Clustering) is an R package for conducting hierarchical clustering on large-scale single-cell RNA-seq (scRNA-seq) data. The key idea is to construct a dendrogram of cells on their shared nearest neighbor (SNN) graph. HGC provides functions for building graphs and for conducting hierarchical clustering on the graph. The users with old R version could visit https://github.com/XuegongLab/HGC/tree/HGC4oldRVersion to get HGC package built for R 3.6.

Author: Zou Ziheng [aut], Hua Kui [aut], XGlab [cre, cph]

Maintainer: XGlab <xglab at mail.tsinghua.edu.cn>

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biocViews Clustering, DNASeq, GraphAndNetwork, RNASeq, SingleCell, Software
Version 1.6.0
In Bioconductor since BioC 3.13 (R-4.1) (2 years)
License GPL-3
Depends R (>= 4.1.0)
Imports Rcpp (>= 1.0.0), RcppEigen (>=, Matrix, RANN, ape, dendextend, ggplot2, mclust, patchwork, dplyr, grDevices, methods, stats
LinkingTo Rcpp, RcppEigen
Suggests BiocStyle, rmarkdown, knitr, testthat (>= 3.0.0)
SystemRequirements C++11
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package HGC_1.6.0.tar.gz
Windows Binary HGC_1.6.0.zip
macOS Binary (x86_64) HGC_1.6.0.tgz
macOS Binary (arm64) HGC_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/HGC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HGC
Bioc Package Browser https://code.bioconductor.org/browse/HGC/
Package Short Url https://bioconductor.org/packages/HGC/
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