DOI: 10.18129/B9.bioc.GladiaTOX  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see GladiaTOX.

R Package for Processing High Content Screening data

Bioconductor version: 3.16

GladiaTOX R package is an open-source, flexible solution to high-content screening data processing and reporting in biomedical research. GladiaTOX takes advantage of the tcpl core functionalities and provides a number of extensions: it provides a web-service solution to fetch raw data; it computes severity scores and exports ToxPi formatted files; furthermore it contains a suite of functionalities to generate pdf reports for quality control and data processing.

Author: Vincenzo Belcastro [aut, cre], Dayne L Filer [aut], Stephane Cano [aut]

Maintainer: PMP S.A. R Support <DL.RSupport at>

Citation (from within R, enter citation("GladiaTOX")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script GladiaTOX
PDF   Reference Manual
Text   NEWS


biocViews Normalization, Preprocessing, QualityControl, Software, WorkflowStep
Version 1.14.0
In Bioconductor since BioC 3.9 (R-3.6) (4 years)
License GPL-2
Depends R (>= 3.6.0), data.table (>= 1.9.4)
Imports DBI, RMySQL, RSQLite, numDeriv, RColorBrewer, parallel, stats, methods, graphics, grDevices, xtable, tools, brew, stringr, RJSONIO, ggplot2, ggrepel, tidyr, utils, RCurl, XML
Suggests roxygen2, knitr, rmarkdown, testthat, BiocStyle
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GladiaTOX_1.14.0.tar.gz
Windows Binary (64-bit only)
macOS Binary (x86_64) GladiaTOX_1.14.0.tgz
macOS Binary (arm64) GladiaTOX_1.14.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Bioc Package Browser
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: