DOI: 10.18129/B9.bioc.GenomAutomorphism  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see GenomAutomorphism.

Compute the automorphisms between DNA's Abelian group representations

Bioconductor version: 3.16

This is a R package to compute the automorphisms between pairwise aligned DNA sequences represented as elements from a Genomic Abelian group. In a general scenario, from genomic regions till the whole genomes from a given population (from any species or close related species) can be algebraically represented as a direct sum of cyclic groups or more specifically Abelian p-groups. Basically, we propose the representation of multiple sequence alignments of length N bp as element of a finite Abelian group created by the direct sum of homocyclic Abelian group of prime-power order.

Author: Robersy Sanchez [aut, cre]

Maintainer: Robersy Sanchez <genomicmath at>

Citation (from within R, enter citation("GenomAutomorphism")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Get started-with GenomAutomorphism
PDF   Reference Manual
Text   NEWS


biocViews ComparativeGenomics, FunctionalGenomics, MathematicalBiology, MultipleSequenceAlignment, Software
Version 1.0.3
In Bioconductor since BioC 3.16 (R-4.2) (< 6 months)
License Artistic-2.0
Depends R (>= 4.2)
Imports Biostrings, BiocGenerics, BiocParallel, GenomeInfoDb, GenomicRanges, IRanges, dplyr, data.table, parallel, doParallel, foreach, methods, S4Vectors, stats, numbers, utils
Suggests spelling, rmarkdown, BiocStyle, testthat (>= 3.0.0), knitr
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GenomAutomorphism_1.0.3.tar.gz
Windows Binary (64-bit only)
macOS Binary (x86_64) GenomAutomorphism_1.0.3.tgz
macOS Binary (arm64) GenomAutomorphism_1.0.3.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Bioc Package Browser
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: