DOI: 10.18129/B9.bioc.GEOexplorer  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see GEOexplorer.

GEOexplorer: an R/Bioconductor package for gene expression analysis and visualisation

Bioconductor version: 3.16

GEOexplorer is a Shiny app that enables exploratory data analysis and differential gene expression of gene expression analysis on microarray gene expression datasets held on the GEO database. The outputs are interactive graphs that enable users to explore the results of the analysis. The development of GEOexplorer was made possible because of the excellent code provided by GEO2R (https: //

Author: Guy Hunt [aut, cre] , Rafael Henkin [ctb, ths] , Fabrizio Smeraldi [ctb, ths] , Michael Barnes [ctb, ths]

Maintainer: Guy Hunt <guypwhunt1992 at>

Citation (from within R, enter citation("GEOexplorer")):


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biocViews DifferentialExpression, GeneExpression, MicroRNAArray, Microarray, Software, mRNAMicroarray
Version 1.4.0
In Bioconductor since BioC 3.14 (R-4.1) (1.5 years)
License GPL-3
Depends shiny, limma, Biobase, plotly, shinyBS
Imports DT, htmltools, factoextra, heatmaply, maptools, pheatmap, scales, shinyHeatmaply, shinybusy, ggplot2, stringr, umap, GEOquery, impute, grDevices, stats, graphics, utils
Suggests rmarkdown, knitr, usethis, testthat (>= 3.0.0)
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