DOI: 10.18129/B9.bioc.GDSArray  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see GDSArray.

Representing GDS files as array-like objects

Bioconductor version: 3.16

GDS files are widely used to represent genotyping or sequence data. The GDSArray package implements the `GDSArray` class to represent nodes in GDS files in a matrix-like representation that allows easy manipulation (e.g., subsetting, mathematical transformation) in _R_. The data remains on disk until needed, so that very large files can be processed.

Author: Qian Liu [aut, cre], Martin Morgan [aut], Hervé Pagès [aut], Xiuwen Zheng [aut]

Maintainer: Qian Liu <qliu7 at>

Citation (from within R, enter citation("GDSArray")):


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biocViews DataRepresentation, GenotypingArray, Infrastructure, Sequencing, Software
Version 1.18.0
In Bioconductor since BioC 3.7 (R-3.5) (5 years)
License GPL-3
Depends R (>= 3.5), gdsfmt, methods, BiocGenerics, DelayedArray(>= 0.5.32)
Imports tools, S4Vectors(>= 0.17.34), SNPRelate, SeqArray
Suggests testthat, knitr, markdown, rmarkdown, BiocStyle, BiocManager
Depends On Me
Imports Me CNVRanger, VariantExperiment
Suggests Me DelayedDataFrame
Links To Me
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