DOI: 10.18129/B9.bioc.GCSscore  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see GCSscore.

GCSscore: an R package for microarray analysis for Affymetrix/Thermo Fisher arrays

Bioconductor version: 3.16

For differential expression analysis of 3'IVT and WT-style microarrays from Affymetrix/Thermo-Fisher. Based on S-score algorithm originally described by Zhang et al 2002.

Author: Guy M. Harris & Shahroze Abbas & Michael F. Miles

Maintainer: Guy M. Harris <harrisgm at vcu.edu>

Citation (from within R, enter citation("GCSscore")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script SScore primer
PDF   Reference Manual
Text   NEWS


biocViews DataImport, DifferentialExpression, Microarray, OneChannel, ProprietaryPlatforms, Software
Version 1.12.0
In Bioconductor since BioC 3.10 (R-3.6) (3.5 years)
License GPL (>=3)
Depends R (>= 3.6)
Imports BiocManager, Biobase, utils, methods, RSQLite, devtools, dplR, stringr, graphics, stats, affxparser, data.table
Suggests siggenes, GEOquery, R.utils
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GCSscore_1.12.0.tar.gz
Windows Binary GCSscore_1.12.0.zip (64-bit only)
macOS Binary (x86_64) GCSscore_1.12.0.tgz
macOS Binary (arm64) GCSscore_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GCSscore
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GCSscore
Bioc Package Browser https://code.bioconductor.org/browse/GCSscore/
Package Short Url https://bioconductor.org/packages/GCSscore/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: