DOI: 10.18129/B9.bioc.FunChIP  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see FunChIP.

Clustering and Alignment of ChIP-Seq peaks based on their shapes

Bioconductor version: 3.16

Preprocessing and smoothing of ChIP-Seq peaks and efficient implementation of the k-mean alignment algorithm to classify them.

Author: Alice Parodi [aut, cre], Marco Morelli [aut, cre], Laura M. Sangalli [aut], Piercesare Secchi [aut], Simone Vantini [aut]

Maintainer: Alice Parodi <alicecarla.parodi at>

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biocViews ChIPSeq, Clustering, Software, StatisticalMethod
Version 1.24.0
In Bioconductor since BioC 3.4 (R-3.3) (6.5 years)
License Artistic-2.0
Depends R (>= 3.5.0), GenomicRanges
Imports shiny, fda, doParallel, GenomicAlignments, Rcpp, methods, foreach, parallel, GenomeInfoDb, Rsamtools, grDevices, graphics, stats, RColorBrewer
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