DOI: 10.18129/B9.bioc.FlowSOM  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see FlowSOM.

Using self-organizing maps for visualization and interpretation of cytometry data

Bioconductor version: 3.16

FlowSOM offers visualization options for cytometry data, by using Self-Organizing Map clustering and Minimal Spanning Trees.

Author: Sofie Van Gassen [aut, cre], Artuur Couckuyt [aut], Katrien Quintelier [aut], Annelies Emmaneel [aut], Britt Callebaut [aut], Yvan Saeys [aut]

Maintainer: Sofie Van Gassen <sofie.vangassen at ugent.be>

Citation (from within R, enter citation("FlowSOM")):


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PDF R Script FlowSOM
PDF   Reference Manual
Text   NEWS


biocViews CellBasedAssays, CellBiology, Clustering, FlowCytometry, Software, Visualization
Version 2.6.0
In Bioconductor since BioC 3.1 (R-3.2) (8 years)
License GPL (>= 2)
Depends R (>= 4.0), igraph
Imports stats, utils, colorRamps, ConsensusClusterPlus, dplyr, flowCore, ggforce, ggnewscale, ggplot2, ggpubr, grDevices, magrittr, methods, rlang, Rtsne, tidyr, BiocGenerics, XML
Suggests BiocStyle, testthat, CytoML, flowWorkspace, ggrepel, scattermore, pheatmap, ggpointdensity
URL http://www.r-project.org http://dambi.ugent.be
Depends On Me
Imports Me CATALYST, CytoTree, diffcyt, MetaCyto
Suggests Me HDCytoData
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package FlowSOM_2.6.0.tar.gz
Windows Binary FlowSOM_2.6.0.zip
macOS Binary (x86_64) FlowSOM_2.6.0.tgz
macOS Binary (arm64) FlowSOM_2.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/FlowSOM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/FlowSOM
Bioc Package Browser https://code.bioconductor.org/browse/FlowSOM/
Package Short Url https://bioconductor.org/packages/FlowSOM/
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