DOI: 10.18129/B9.bioc.FitHiC  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see FitHiC.

Confidence estimation for intra-chromosomal contact maps

Bioconductor version: 3.16

Fit-Hi-C is a tool for assigning statistical confidence estimates to intra-chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.

Author: Ferhat Ay [aut] (Python original,, Timothy L. Bailey [aut], William S. Noble [aut], Ruyu Tan [aut, cre, trl] (R port)

Maintainer: Ruyu Tan <rut003 at>

Citation (from within R, enter citation("FitHiC")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Vignette Title
PDF   Reference Manual
Text   NEWS


biocViews DNA3DStructure, Software
Version 1.24.0
In Bioconductor since BioC 3.4 (R-3.3) (6.5 years)
License GPL (>= 2)
Imports data.table, fdrtool, grDevices, graphics, Rcpp, stats, utils
LinkingTo Rcpp
Suggests knitr, rmarkdown
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package FitHiC_1.24.0.tar.gz
Windows Binary
macOS Binary (x86_64) FitHiC_1.24.0.tgz
macOS Binary (arm64) FitHiC_1.24.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Bioc Package Browser
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: