DOI: 10.18129/B9.bioc.ENmix  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see ENmix.

Quality control and analysis tools for Illumina DNA methylation BeadChip

Bioconductor version: 3.16

Tools for quanlity control, analysis and visulization of Illumina DNA methylation array data.

Author: Zongli Xu [cre,aut], Liang Niu [aut] , Jack Taylor [ctb]

Maintainer: Zongli Xu <xuz at niehs.nih.gov>

Citation (from within R, enter citation("ENmix")):


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HTML R Script ENmix User's Guide
PDF   Reference Manual
Text   NEWS


biocViews BatchEffect, DNAMethylation, DataImport, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylationArray, Microarray, MultiChannel, Normalization, OneChannel, Preprocessing, PrincipalComponent, QualityControl, Regression, Software, TwoChannel
Version 1.34.02
In Bioconductor since BioC 3.1 (R-3.2) (8 years)
License Artistic-2.0
Depends R (>= 3.5.0), parallel, doParallel, foreach, SummarizedExperiment, stats
Imports grDevices, graphics, preprocessCore, matrixStats, methods, utils, geneplotter, impute, minfi, RPMM, illuminaio, dynamicTreeCut, IRanges, gtools, Biobase, ExperimentHub, AnnotationHub, genefilter, gplots, quadprog, S4Vectors
Suggests minfiData, RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown
URL https://github.com/Bioconductor/ENmix
BugReports https://github.com/Bioconductor/ENmix/issues
Depends On Me
Imports Me
Suggests Me
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Follow Installation instructions to use this package in your R session.

Source Package ENmix_1.34.02.tar.gz
Windows Binary ENmix_1.34.02.zip
macOS Binary (x86_64) ENmix_1.34.02.tgz
macOS Binary (arm64) ENmix_1.34.02.tgz
Source Repository git clone https://git.bioconductor.org/packages/ENmix
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ENmix
Bioc Package Browser https://code.bioconductor.org/browse/ENmix/
Package Short Url https://bioconductor.org/packages/ENmix/
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