DOI: 10.18129/B9.bioc.DNAshapeR  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see DNAshapeR.

High-throughput prediction of DNA shape features

Bioconductor version: 3.16

DNAhapeR is an R/BioConductor package for ultra-fast, high-throughput predictions of DNA shape features. The package allows to predict, visualize and encode DNA shape features for statistical learning.

Author: Tsu-Pei Chiu and Federico Comoglio

Maintainer: Tsu-Pei Chiu <tsupeich at usc.edu>

Citation (from within R, enter citation("DNAshapeR")):


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biocViews DNA3DStructure, Software, StructuralPrediction
Version 1.26.0
In Bioconductor since BioC 3.3 (R-3.3) (7 years)
License GPL-2
Depends R (>= 3.4), GenomicRanges
Imports Rcpp (>= 0.12.1), Biostrings, fields
LinkingTo Rcpp
Suggests AnnotationHub, knitr, rmarkdown, testthat, BSgenome.Scerevisiae.UCSC.sacCer3, BSgenome.Hsapiens.UCSC.hg19, caret
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package DNAshapeR_1.26.0.tar.gz
Windows Binary DNAshapeR_1.26.0.zip (64-bit only)
macOS Binary (x86_64) DNAshapeR_1.26.0.tgz
macOS Binary (arm64) DNAshapeR_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DNAshapeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DNAshapeR
Bioc Package Browser https://code.bioconductor.org/browse/DNAshapeR/
Package Short Url https://bioconductor.org/packages/DNAshapeR/
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