DOI: 10.18129/B9.bioc.Cogito  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see Cogito.

Compare genomic intervals tool - Automated, complete, reproducible and clear report about genomic and epigenomic data sets

Bioconductor version: 3.16

Biological studies often consist of multiple conditions which are examined with different laboratory set ups like RNA-sequencing or ChIP-sequencing. To get an overview about the whole resulting data set, Cogito provides an automated, complete, reproducible and clear report about all samples and basic comparisons between all different samples. This report can be used as documentation about the data set or as starting point for further custom analysis.

Author: Annika Bürger [cre, aut]

Maintainer: Annika Bürger <a.buerger at>

Citation (from within R, enter citation("Cogito")):


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biocViews FunctionalGenomics, GeneRegulation, Sequencing, Software
Version 1.4.0
In Bioconductor since BioC 3.14 (R-4.1) (1.5 years)
License LGPL-3
Depends R (>= 4.1), GenomicRanges, jsonlite, GenomicFeatures, entropy
Imports BiocManager, rmarkdown, GenomeInfoDb, S4Vectors, AnnotationDbi, graphics, stats, utils, methods, magrittr, ggplot2, TxDb.Mmusculus.UCSC.mm9.knownGene
Suggests BiocStyle, knitr, markdown, testthat (>= 3.0.0)
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