DOI: 10.18129/B9.bioc.Clomial  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see Clomial.

Infers clonal composition of a tumor

Bioconductor version: 3.16

Clomial fits binomial distributions to counts obtained from Next Gen Sequencing data of multiple samples of the same tumor. The trained parameters can be interpreted to infer the clonal structure of the tumor.

Author: Habil Zare and Alex Hu

Maintainer: Habil Zare <zare at>

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PDF R Script A likelihood maximization approach to infer the clonal structure of a cancer using multiple tumor samples
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biocViews Bayesian, Clustering, DNASeq, ExomeSeq, GeneticVariability, Genetics, ImmunoOncology, MultipleComparison, Sequencing, Software, TargetedResequencing
Version 1.34.0
In Bioconductor since BioC 2.14 (R-3.1) (9 years)
License GPL (>= 2)
Depends R (>= 2.10), matrixStats
Imports methods, permute
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