DOI: 10.18129/B9.bioc.AneuFinder  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see AneuFinder.

Analysis of Copy Number Variation in Single-Cell-Sequencing Data

Bioconductor version: 3.16

AneuFinder implements functions for copy-number detection, breakpoint detection, and karyotype and heterogeneity analysis in single-cell whole genome sequencing and strand-seq data.

Author: Aaron Taudt, Bjorn Bakker, David Porubsky

Maintainer: Aaron Taudt <aaron.taudt at>

Citation (from within R, enter citation("AneuFinder")):


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PDF R Script A quick introduction to AneuFinder
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biocViews CopyNumberVariation, GenomicVariation, HiddenMarkovModel, ImmunoOncology, Sequencing, SingleCell, Software, WholeGenome
Version 1.26.0
In Bioconductor since BioC 3.3 (R-3.3) (7 years)
License Artistic-2.0
Depends R (>= 3.5), GenomicRanges, ggplot2, cowplot, AneuFinderData
Imports methods, utils, grDevices, graphics, stats, foreach, doParallel, BiocGenerics(>= 0.31.6), S4Vectors, GenomeInfoDb, IRanges, Rsamtools, bamsignals, DNAcopy, ecp, Biostrings, GenomicAlignments, reshape2, ggdendro, ggrepel, ReorderCluster, mclust
Suggests knitr, BiocStyle, testthat, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10
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