DOI: 10.18129/B9.bioc.AffiXcan  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see AffiXcan.

A Functional Approach To Impute Genetically Regulated Expression

Bioconductor version: 3.16

Impute a GReX (Genetically Regulated Expression) for a set of genes in a sample of individuals, using a method based on the Total Binding Affinity (TBA). Statistical models to impute GReX can be trained with a training dataset where the real total expression values are known.

Author: Alessandro Lussana [aut, cre]

Maintainer: Alessandro Lussana <alessandro.lussana at>

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biocViews DimensionReduction, GeneExpression, GeneRegulation, PrincipalComponent, Regression, Software, Transcription
Version 1.16.0
In Bioconductor since BioC 3.8 (R-3.5) (4.5 years)
License GPL-3
Depends R (>= 3.6), SummarizedExperiment
Imports MultiAssayExperiment, BiocParallel, crayon
Suggests BiocStyle, knitr, rmarkdown
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