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Bioconductor version: Release (3.15)
SpikeLI is a package that performs the analysis of the Affymetrix spike-in data using the Langmuir Isotherm. The aim of this package is to show the advantages of a physical-chemistry based analysis of the Affymetrix microarray data compared to the traditional methods. The spike-in (or Latin square) data for the HGU95 and HGU133 chipsets have been downloaded from the Affymetrix web site. The model used in the spikeLI package is described in details in E. Carlon and T. Heim, Physica A 362, 433 (2006).
Author: Delphine Baillon, Paul Leclercq <paulleclercq at hotmail.com>, Sarah Ternisien, Thomas Heim, Enrico Carlon <enrico.carlon at fys.kuleuven.be>
Maintainer: Enrico Carlon <enrico.carlon at fys.kuleuven.be>
Citation (from within R,
enter citation("spikeLI")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("spikeLI")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("spikeLI")
spikeLI | ||
Reference Manual |
biocViews | Microarray, QualityControl, Software |
Version | 2.56.0 |
In Bioconductor since | BioC 1.9 (R-2.4) (16 years) |
License | GPL-2 |
Depends | |
Imports | graphics, grDevices, stats, utils |
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Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | spikeLI_2.56.0.tar.gz |
Windows Binary | spikeLI_2.56.0.zip |
macOS Binary (x86_64) | spikeLI_2.56.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/spikeLI |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/spikeLI |
Package Short Url | https://bioconductor.org/packages/spikeLI/ |
Package Downloads Report | Download Stats |
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