heatmaps

DOI: 10.18129/B9.bioc.heatmaps    

Flexible Heatmaps for Functional Genomics and Sequence Features

Bioconductor version: Release (3.15)

This package provides functions for plotting heatmaps of genome-wide data across genomic intervals, such as ChIP-seq signals at peaks or across promoters. Many functions are also provided for investigating sequence features.

Author: Malcolm Perry <mgperry32 at gmail.com>

Maintainer: Malcolm Perry <mgperry32 at gmail.com>

Citation (from within R, enter citation("heatmaps")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("heatmaps")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("heatmaps")

 

HTML R Script Vignette Title
PDF   Reference Manual
Text   NEWS

Details

biocViews FunctionalGenomics, SequenceMatching, Software, Visualization
Version 1.20.0
In Bioconductor since BioC 3.5 (R-3.4) (5.5 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports methods, grDevices, graphics, stats, Biostrings, GenomicRanges, IRanges, KernSmooth, plotrix, Matrix, EBImage, RColorBrewer, BiocGenerics, GenomeInfoDb
LinkingTo
Suggests BSgenome.Drerio.UCSC.danRer7, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package heatmaps_1.20.0.tar.gz
Windows Binary heatmaps_1.20.0.zip (64-bit only)
macOS Binary (x86_64) heatmaps_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/heatmaps
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/heatmaps
Package Short Url https://bioconductor.org/packages/heatmaps/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: