cellxgenedp

DOI: 10.18129/B9.bioc.cellxgenedp    

Discover and Access Single Cell Data Sets in the cellxgene Data Portal

Bioconductor version: Release (3.15)

The cellxgene data portal (https://cellxgene.cziscience.com/) provides a graphical user interface to collections of single-cell sequence data processed in standard ways to 'count matrix' summaries. The cellxgenedp package provides an alternative, R-based inteface, allowind data discovery, viewing, and downloading.

Author: Martin Morgan [aut, cre] , Kayla Interdonato [aut], Daniel Parker [aut, cph] (jsoncons C++ library creator)

Maintainer: Martin Morgan <mtmorgan.bioc at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cellxgenedp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cellxgenedp")

 

HTML	R Script	Discover and download datasets and files from the cellxgene data portal
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataImport, SingleCell, Software, ThirdPartyClient
Version	1.0.1
In Bioconductor since	BioC 3.15 (R-4.2) (0.5 years)
License	Artistic-2.0 | BSL-1.0 | file LICENSE
Depends
Imports	dplyr, httr, curl, jsonlite, utils, tools, parallel, shiny, DT
LinkingTo	cpp11
Suggests	zellkonverter, SingleCellExperiment, HDF5Array, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), mockery
SystemRequirements	C++14
Enhances
URL
Depends On Me
Imports Me	UniProt.ws
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	cellxgenedp_1.0.1.tar.gz
Windows Binary	cellxgenedp_1.0.1.zip (64-bit only)
macOS Binary (x86_64)	cellxgenedp_1.0.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/cellxgenedp
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/cellxgenedp
Package Short Url	https://bioconductor.org/packages/cellxgenedp/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.15	Source Archive