Contents

Compiled date: 2021-10-26

Last edited: 2021-04-16

License: GPL-3

1 Installation

Run the following code to install the Bioconductor version of package.

# install.packages("BiocManager")
BiocManager::install("POMA")

2 Load POMA

library(POMA)

3 Automatic EDA Report

The following function will return an Exploratory Data Analysis (EDA) PDF report. The input object must be an MSnSet object.

data("st000336")
PomaEDA(st000336)

Generated EDA PDF report starts here.

4 Know your data

4.1 Summary Table

Samples Features Covariates
57 31 1
Counts_Zero Percent_Zero
0 0 %
Counts_NA Percent_NA
61 3.45 %

4.2 Samples by Group

5 Normalization Plots

6 Group Distribution Plots