Changes in version 4.1.4 - import yulab.utils (2021-08-20, Fri) Changes in version 4.1.3 - Remove Human Gut Microbiome dataset as the functionalities are provided in https://github.com/YuLab-SMU/MicrobiomeProfiler (2021-08-15, Sun) Changes in version 4.1.2 - update citation and DESCRIPTION (2021-08-15, Sun) - update kegg_species.rda and allow online download using KEGG api (2021-08-14, Sat) Changes in version 4.1.1 - add citation (new paper published on The Innovation) (2021-07-04, Sun) Changes in version 4.0.0 - Bioconductor 3.13 release Changes in version 3.99.1 - Add new data set, DE_GSE8057, which contains DE genes obtained from GSE8057 (2020-03-08, Mon) Changes in version 3.99.0 - Add KEGG enrichment analysis of Human Gut Microbiome data (2021-02-20, Sat) Changes in version 3.19.1 - setting default timeout to 300 for downloads (2021-02-05, Fri) - fixed download method setting - capable of setting KEGG download method via options(clusterProfiler.download.method = METHOD) (2020-12-31, Thu) Changes in version 3.18.0 - Bioconductor 3.12 release (2020-10-28, Wed) Changes in version 3.17.5 - update [[.compareClusterResult (2020-10-14, Wed) Changes in version 3.17.3 - internal suports of enrichment analyses using WikiPathways (2020-09-09, Wed) - enrichWP for ORA analysis - gseWP for GSEA analysis - get_wp_organisms for listing supported organisms - read.gmt.wp for parsing gmt file downloaded from wikiPathways Changes in version 3.17.2 - use libcurl if capable (2020-09-08, Tue) - https://github.com/YuLab-SMU/clusterProfiler/pull/290 Changes in version 3.17.1 - bug fixed of extract_params (2020-08-18, Tue) - https://github.com/YuLab-SMU/clusterProfiler/issues/282 Changes in version 3.16.0 - Bioconductor 3.11 release Changes in version 3.15.3 - incorporate clusterProfiler.dplyr (2020-03-12, Thu) - arrange, filter, group_by, mutate, rename, select, slice and summarize Changes in version 3.15.2 - remove Suggests of KEGG.db as it will be deprecated in Bioconductor 3.11 (2020-01-14, Tue) - optimize enrichGO to use less memory (2019-12-13, Fri) - re-implement read.gmt without using GSEABase, and my own version is much more fasta :) Changes in version 3.15.1 - e.g. user can pass fun=enrichGO to compareCluster without quoting enrichGO (2019-12-02, Mon) - add keytype and readable info in compareCluster output - mv compareClusterResult class defintion to DOSE (2019-11-02, Sat) - mv fortify, barplot and dotplot for compareClusterResult to enrichplot. Changes in version 3.14.0 - Bioconductor 3.10 release Changes in version 3.12.0 - Bioconductor 3.9 release Changes in version 3.11.1 - asis parameter in [.compareClusterResult (2018-12-24, Mon) - https://github.com/GuangchuangYu/enrichplot/issues/17 Changes in version 3.10.0 - Bioconductor 3.8 release Changes in version 3.9.2 - re-export DOSE::gsfilter and DOSE::setReadable (2018-05-25, Fri) Changes in version 3.9.1 - change color scheme of dotplot of compareClusterResult back to red->purple (2018-05-17, Thu) - https://support.bioconductor.org/p/108996/ Changes in version 3.8.0 - Bioconductor 3.7 release Changes in version 3.7.1 - uniprot_get function (2018-01-30, Tue) - import enrichplot (2018-01-29, Mon)