rWikiPathways

DOI: 10.18129/B9.bioc.rWikiPathways    

rWikiPathways - R client library for the WikiPathways API

Bioconductor version: Release (3.14)

Use this package to interface with the WikiPathways API. It provides programmatic access to WikiPathways content in multiple data and image formats, including official monthly release files and convenient GMT read/write functions.

Author: Egon Willighagen [aut, cre] , Alex Pico [aut]

Maintainer: Egon Willighagen <egon.willighagen at gmail.com>

Citation (from within R, enter citation("rWikiPathways")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rWikiPathways")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rWikiPathways")

 

HTML R Script 1. Overview
HTML R Script 2. rWikiPathways and BridgeDbR
HTML R Script 3. rWikiPathways and RCy3
HTML R Script 4. Pathway Analysis
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews GraphAndNetwork, Metabolomics, Network, Software, ThirdPartyClient, Visualization
Version 1.14.0
In Bioconductor since BioC 3.7 (R-3.5) (3.5 years)
License MIT + file LICENSE
Depends
Imports httr, utils, XML, rjson, data.table, tidyr, RCurl
LinkingTo
Suggests testthat, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/wikipathways/rwikipathways
BugReports https://github.com/wikipathways/rwikipathways/issues
Depends On Me
Imports Me famat, multiSight, NoRCE, TimiRGeN
Suggests Me TRONCO
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rWikiPathways_1.14.0.tar.gz
Windows Binary rWikiPathways_1.14.0.zip
macOS 10.13 (High Sierra) rWikiPathways_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rWikiPathways
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rWikiPathways
Package Short Url https://bioconductor.org/packages/rWikiPathways/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

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