ncRNAtools

DOI: 10.18129/B9.bioc.ncRNAtools    

An R toolkit for non-coding RNA

Bioconductor version: Release (3.14)

ncRNAtools provides a set of basic tools for handling and analyzing non-coding RNAs. These include tools to access the RNAcentral database and to predict and visualize the secondary structure of non-coding RNAs. The package also provides tools to read, write and interconvert the file formats most commonly used for representing such secondary structures.

Author: Lara Selles Vidal [cre, aut] , Rafael Ayala [aut] , Guy-Bart Stan [aut] , Rodrigo Ledesma-Amaro [aut]

Maintainer: Lara Selles Vidal <lara.selles at oist.jp>

Citation (from within R, enter citation("ncRNAtools")):

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ncRNAtools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ncRNAtools")

 

HTML R Script rfaRm
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, FunctionalGenomics, Software, StructuralPrediction, ThirdPartyClient, Visualization
Version 1.4.0
In Bioconductor since BioC 3.12 (R-4.0) (1.5 years)
License GPL-3
Depends
Imports httr, xml2, utils, methods, grDevices, ggplot2, IRanges, GenomicRanges, S4Vectors
LinkingTo
Suggests knitr, BiocStyle, rmarkdown, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
BugReports https://github.com/LaraSellesVidal/ncRNAtools/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ncRNAtools_1.4.0.tar.gz
Windows Binary ncRNAtools_1.4.0.zip
macOS 10.13 (High Sierra) ncRNAtools_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ncRNAtools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ncRNAtools
Package Short Url https://bioconductor.org/packages/ncRNAtools/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: